PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028315001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 337aa    MW: 37677.2 Da    PI: 6.5166
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028315001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-17138187355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g
  GSVIVT01028315001 138 YRGVRKRP-WGKFAAEIRDSTR---HgVRVWLGTFDSAEAAALAYDQAAFSMRG 187
                        9*******.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-22137197IPR016177DNA-binding domain
SMARTSM003806.1E-36137201IPR001471AP2/ERF domain
PROSITE profilePS5103222.879137195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-29137196IPR001471AP2/ERF domain
PfamPF008471.2E-12138187IPR001471AP2/ERF domain
PRINTSPR003676.6E-10138149IPR001471AP2/ERF domain
CDDcd000184.89E-18138196No hitNo description
PRINTSPR003676.6E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MARDEVIKTT SGVQLDSDPP PCPIDSRALI PSGKNIAFNS MDSSSFYHQY QSSEFSPESS  60
SFGSSEYFSS WDEPLFHHNS LPFNINDSDE MILFDMLAEG ARDSSETASS VGGAAKEEEV  120
TSNAKEPTPN KKEKEKTYRG VRKRPWGKFA AEIRDSTRHG VRVWLGTFDS AEAAALAYDQ  180
AAFSMRGTMA VLNFPVERVV ESLRDIKYAC EDGGSPVVAL KRRHSMRRKS TEARKEDITG  240
RDGTVHASSA ERGSKSVVTV GRRLSVEDDE RRVADRFFKI MEYPHKSMVT ALILVNGHHY  300
LLVDLRSSTF HCHFHLGFVW VKSIEADLEF YGWVLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26134196264ATERF1
3gcc_A2e-26134196264ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4439150.0AM443915.2 Vitis vinifera contig VV78X062884.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264656.11e-138PREDICTED: ethylene-responsive transcription factor 1B
TrEMBLF6HZJ31e-138F6HZJ3_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g03260.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-45ethylene response factor 1